We can try to take a sixth root by first taking a cube root $\sqrt[3]{3}$, then trying to take a square root of this. The cube root is actually not a problem: $\sqrt[3]{3} \equiv 3 \bmod 8$, so we can apply Hensel's lemma to find a cube root in $\mathbb{Q}_2$ congruent to $3 \bmod 8$. $\mathbb{Q}_2$ has no nontrivial cube roots of unity so this cube root is unique, and we can compute its $2$-adic expansion to arbitrary precision; it ends
$$\sqrt[3]{3} = \dots 10111011_2.$$
This means $\frac{\sqrt[3]{3}}{3} \equiv 1 \bmod 8$, and every element of $\mathbb{Q}_2$ congruent to $1 \bmod 8$ has a square root (again by Hensel's lemma), whose $2$-adic expansion we can also compute to arbitrary precision; so actually there is a sixth root of $3$ already living in the quadratic extension
$$\mathbb{Q}_2(\sqrt{3})$$
and the problem can be reduced to computing the square root of $3$. (This extension contains one of the three cube roots of $3$; to get the others we need to multiply by cube roots of unity as usual.)
This is a problem since squares are congruent to $0, 1 \bmod 4$, so no square root exists $\bmod 4$. This means we have to pass to an extension $\mathbb{Q}_2(\sqrt{3})$, and this extension is ramified, and that does matter.
By contrast, $\mathbb{Q}_2(\sqrt{5})$ is unramified, which means it is easy to understand in the following sense: unramified extensions of $\mathbb{Q}_p$ are in one-to-one correspondence with extensions of $\mathbb{F}_p$, and this correspondence preserves degrees. So there is a unique unramified quadratic extension of $\mathbb{Q}_2$ corresponding to the unique quadratic extension $\mathbb{F}_4$ of $\mathbb{F}_2$. $\mathbb{F}_4$ can be thought of as being obtained by adjoining a cube root of unity, and it turns out that the same can be done with the corresponding extension of $\mathbb{Q}_2$, meaning it is
$$\mathbb{Q}_2(\omega) \cong \mathbb{Q}_2(\sqrt{-3}).$$
This is not obviously the same as $\mathbb{Q}_2(\sqrt{5})$, but we have $\frac{\sqrt{5}}{\sqrt{-3}} = \sqrt{-\frac{5}{3}}$ and we can check that this square root exists in $\mathbb{Q}_2$ already (it suffices for $-\frac{5}{3} \equiv 1 \bmod 8$ and then we can apply Hensel's lemma again), so $\sqrt{5}$ is a rational multiple of $\sqrt{-3}$ and $\sqrt{-3}$ can be expressed in terms of $\omega$.
One upshot of all this is that if you want a more explicit description of $\omega$, $\sqrt{5}$, or $\sqrt{-3}$, they all turn out to have what one might call "$4$-adic expansions," where by $4$-adic here I don't mean having coefficients $\bmod 4$ but having coefficients living in $\mathbb{F}_4$. Actually to extend the analogy further it would not be too unreasonable to call the unique unramified quadratic extension $\mathbb{Q}_4$ although I think it is usually just called $\mathbb{Q}_2(\zeta_3)$.
Unfortunately $\mathbb{Q}_2(\sqrt{3})$ is ramified so it does not admit this nice description in terms of $\mathbb{F}_4$. This is where my number theory knowledge runs out; I don't understand in what sense it's possible to describe this extension more explicitly, which complicates the question of what it means to "find" $\sqrt{3}$ over $\mathbb{Q}_2$. Possibly this is already the simplest description.
In any case, we at least get that we can write down two of the possible values of $\sqrt[6]{3}$ explicitly as a rational multiple of $\sqrt{3}$. We can get the other four by adjoining $\omega$, which will give us $-\omega$, a primitive sixth root of unity. The conclusion is that the splitting field of $x^6 - 3$ is the compositum of two quadratic extensions $\mathbb{Q}_2(\sqrt{3}, \omega)$, one ramified and one unramified.