Vector calculus, usually used in Physics etc., is the branch of mathematics that deals with calculus operations in three-dimensional Euclidean space.
The scalar Laplacian operator (is usually denoted by $\nabla^2$ or $\nabla \cdot \nabla$, where $\cdot$ is the dot product) of a potential function $f: \mathbb{R}^3 \rightarrow \mathbb{R}$ is given by
$$ \nabla^2 f = \frac{\partial^2 f}{\partial x_1^2} + \frac{\partial^2 f}{\partial x_2^2} + \frac{\partial^2 f}{\partial x_3^2}, $$ where $\mathbf{x} = (x_1, x_2, x_2)$ is the input vector of $f$.
The same notation is used for the so-called vector Lapacian operator, which is applied on a vector field, say, $\mathbf{F}: \mathbb{R}^3 \rightarrow \mathbb{R}^3$ given by
$$ \nabla^2 \mathbf{F} = \left(\frac{\partial^2 F_1}{\partial x_1^2}, \frac{\partial^2 F_2}{\partial x_2^2}, \frac{\partial^2 F_3}{\partial x_3^2} \right), $$ where $\mathbf{F} = F_1 \hat{\mathbf{i}} + F_2 \hat{\mathbf{j}} + F_3 \hat{\mathbf{k}} $
So far, so good, I can implicitly differ scalar from vector Laplacian operator them by observing whether the operator $\nabla^2$ is being applied to a potential (scalar-valued) function or a vector field (vector-valued) function.
The problem is, sadly, it becomes ambiguous when you also use the notations of Matrix Calculus, which is another branch of mathematics that commonly deals with higher order dimensions, being therefore used in many fields, such as Convex Optimization, Statistical Signal Processing, Machine Learning, etc.
For instance, in denominator layout, the Hessian matrix is usually denoted as (take the Simon Haykin book as reference, eqs. (3.15) and (4.54)) $$ \mathbf{H} = \nabla^2 f = \dfrac{\partial^{2} f(\mathbf{x})}{\partial \mathbf{x}^2} = \left[ \begin{matrix} \dfrac{\partial^{2} f}{\partial x_1^2} & \dfrac{\partial^{2} f}{\partial x_1 \partial x_2} & \cdots & \dfrac{\partial^{2} f}{\partial x_1 \partial x_n} \\ \dfrac{\partial^{2} f}{\partial x_2 \partial x_1} & \dfrac{\partial^{2} f}{\partial x_2^2} & \cdots & \dfrac{\partial^{2} f}{\partial x_2 \partial x_n} \\ \vdots & \vdots & \ddots & \vdots \\ \dfrac{\partial^{2} f}{\partial x_n \partial x_1} & \dfrac{\partial^{2} f}{\partial x_n \partial x_2} & \dots & \dfrac{\partial^{2} f}{\partial x_n^2} \end{matrix} \right] $$
The very same notation $\nabla^2$ is used. The mathematical computation, however, is completely different. Note that, for the gradient, $\nabla f$, both branches of mathematics agree as their results are the same.
My question is: how should I deal with this ambiguity in a situation where the application is based on both branches of mathematics?