I'm starting to learn topology watching "The WE-Heraeus International Winter School on Gravity and Light" series on YouTube in which it uses open sets and neighborhood to define Topology. In the neighborhood definition, it defines a soft ball and claims that for open set $O$, $U \in O$ means for all $p \in U$ there exists
$r \in R^+: B_r(p) \subseteq U$, where $ B_r := \{(q_1, ...q_d)| \sum_{n=1}^{d} {(q_1 - p_i)}^{2} < r \}$
where $B_r(p)$ is the soft ball. However to me there seems to be an inconsistency in two definitions because aside from the empty set, $U$ is comprised of sets of rank 1 or greater than 1 where sets of rank greater than 1 are the neighborhoods. But according to the open set definition, any arbitrary union of subsets is also a subset of $U$. So if we have points or rank 1 subsets $\{x\}$ and $\{y\}$ in $U$ which are far apart, $\{x, y\}$ must also be a subset. But $\{x, y\}$ fails to satisfy the neighborhood definition since it does not describe a neighborhood but are two points that is just far apart. So have my thinking gone wrong?