You're right that the action of $Gal(\overline{\mathbb{Q}}/\mathbb{Q})$ on $G$ is just the outer action from the homotopy exact sequence, though technically you really need a legit action (not just an outer action), so perhaps he's assuming that the homotopy exact sequence is split (possibly by a $\mathbb{Q}$-rational point of $X$?)
Now, noting that $Gal(\overline{\mathbb{Q}}/\mathbb{Q})\cong\pi_1(\text{Spec }\mathbb{Q})$, recall that the Galois correspondence says that the category $FEt_\mathbb{Q}$ of finite etale covers of Spec $\mathbb{Q}$ is equivalent to the category of finite sets equipped with an action of $\pi_1(\text{Spec }\mathbb{Q})$. There's actually a refinement of the Galois correspondence which you can find in SGA 1 (Expose V, Prop 5.2), which says that the pro-category Pro-$FEt_\mathbb{Q}$ is equivalent to the category of compact hausdorff totally disconnected topological spaces equipped with a continuous action of $\pi_1(\text{Spec }\mathbb{Q})$. Now, clearly $\hat{G}$ is such a compact hausdorff totally disconnected space with an action of $Gal(\overline{\mathbb{Q}}/\mathbb{Q})$, so by this equivalence this corresponds to an object $\underline{G}\in$ Pro-$FEt_\mathbb{Q}$.
Now, by definition, objects of Pro-$FEt_\mathbb{Q}$ are just formal inverse systems of objects in $FEt_\mathbb{Q}$ (they are not their limits!), but by taking limits, in this case we can identify $\underline{G}$ with an actual scheme (which in this case is a group scheme). To view it as a sheaf, you simply define its sections over any etale $T\rightarrow\text{Spec }\mathbb{Q}$ as $Hom_\mathbb{Q}(T,\underline{G})$.
Since $\underline{G}$ is a group scheme, this set is a group, though in general any scheme $X$ determines a sheaf of sets of the form $Hom(*,X)$.
Why does this mean that $G$ has a section? Well, since $\pi_1(D)$ acts on the fiber of $G$ via group automorphisms, and since any group automorphism fixes the identity, this implies that $G$ has a section, namely the identity section.
– oxeimon Aug 29 '16 at 19:17