The idea is that you gain no additional information by taking an infinitesimal step forward in time.
Remember that an $\mathit{intersection}$ means that we are taking only the elements contained in EVERY set in the intersection. So, if we think of each $F_t$ as the information contained in the system up to time $t$, the intersection $\cap_{\epsilon > 0} \mathcal{F}_{t+\epsilon}$ contains only the information in EVERY $\mathcal{F}_{t+\epsilon}$ for every possible value of $\epsilon > 0$. That is, only the information contained up until $t+\epsilon$ for every $\epsilon > 0$, in particular, any arbitrarily small $\epsilon$. So, in this intersection, we have added only the information gained by taking an infinitesimally small step forward in time.
Thus, the idea of right continuity, $\mathcal{F}_t=\cap_{\epsilon > 0} \mathcal{F}_{t+\epsilon}$ is that no information is added in this infinitesimal step. In other words, there are no instantaneous developments of the system, it evolves in a continuous fashion going forward in time.
(Much credit for this answer is due to Huyen Pham, whose book I'm currently using to review some of this material.)